PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 152aa    MW: 17125.5 Da    PI: 6.9737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005270.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-111562655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                   HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                          + +Er+RR++++  +++L +l+P++   + +K  s  + L +A  YIk+Lq
  HL.SW.v1.0.G005270.1 15 KTIERNRRNQMKVLYSKLNSLVPQQ---TTRKvTSLPDQLDEAATYIKKLQ 62
                          579*********************9...88998*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.94961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-111576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-111576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-81662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-51766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDLNPISSRT TTDMKTIERN RRNQMKVLYS KLNSLVPQQT TRKVTSLPDQ LDEAATYIKK  60
LQISIERMKE KRNRLMGYNN NNNDLNGGGG SNFMSINSGN SLIGEAINGD MSLKSPHIEV  120
HEMGLALEIV LITGLDFQFM FNETIHILHE E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868749.11e-58PREDICTED: transcription factor bHLH36
TrEMBLW9RYX71e-52W9RYX7_9R
STRINGVIT_00s0479g00020.t012e-51(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-25bHLH family protein